Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_0433Silver efflux pump. (101 aa)    
Predicted Functional Partners:
Lgee_0431
Hypothetical protein.
 
   
 0.952
Lgee_0432
Hypothetical protein; Belongs to the UPF0276 family.
 
   
 0.932
Lgee_0430
Signal peptide protein.
 
   
 0.870
yceI
Polyprenyl-pyrophosphate binding protein; Belongs to the UPF0312 family.
       0.629
cybA
Cytochrome b561 transmembrane protein.
       0.597
Lgee_0427
Putative YceI-like family protein; Belongs to the UPF0312 family.
       0.580
yhbH
Ribosome-associated, sigma 54 modulation protein.
       0.462
Lgee_2015
Type II/III secretion system protein.
  
     0.407
Lgee_1172
DamX-related protein.
  
     0.404
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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