Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nifUNitrogen fixation protein NifU. (147 aa)    
Predicted Functional Partners:
sufS
Selenocysteine lyase, PLP-dependent; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.999
iscS
Cysteine desulfurase.
 
 0.999
Lgee_0470
Rrf2 family transporter protein.
 
  
 0.996
sufC
ATP transporter ATP- binding protein.
 
  
 0.989
djlA
DNA binding protein DnaJ, heat shock protein.
  
 0.984
sufB
Cysteine desulfurase.
  
  
 0.982
sufD
Component of SufBCD complex.
  
  
 0.981
Lgee_0476
Metal-sulfur cluster biosynthetic enzyme.
  
  
 0.977
sufA
Fe-S cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.969
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.966
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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