Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_0482Hypothetical protein. (76 aa)    
Predicted Functional Partners:
dotG
IcmE/DotG protein.
   
 
 0.766
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.725
Lgee_0484
Hypothetical protein.
       0.715
yjeA
Endo-1,4-beta-xylanase.
   
   0.584
Lgee_2269
Outer membrane protein OmpH; Belongs to the skp family.
  
 
 0.570
Lgee_0485
Hypothetical protein.
       0.543
Lgee_0481
Recombinase B.
       0.534
flgE_1
Flagellar hook protein FlgE.
   
 
 0.506
flgE_2
Flagellar hook protein FlgE.
   
 
 0.506
Lgee_0488
Hypothetical protein.
  
 
 0.493
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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