Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_0488Hypothetical protein. (610 aa)    
Predicted Functional Partners:
Lgee_0099
Putative helicase/relaxase.
   
 
 0.725
ybgF
Outer membrane protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.614
Lgee_0024
Sensory box histidine kinase/response regulator.
   
 
 0.598
Lgee_1507
Sensory box histidine kinase/response regulator.
   
 
 0.598
Lgee_0709
Regulatory protein (GGDEF and EAL domains).
  
  
 0.578
cphA
Cyanophycin synthetase.
     
 0.569
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
 0.563
Lgee_0276
Putative glucosyltransferase Lgt1.
  
 
 0.528
tolA
TolA colicin import membrane protein.
  
 
 0.528
Lgee_0489
Protein kinase domain containing protein.
       0.527
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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