STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traG_2Conjugal transfer coupling protein TraG. (609 aa)    
Predicted Functional Partners:
traF_2
Conjugal transfer peptidase TraF.
 
     0.950
traC_2
DNA primase TraC.
 
    0.949
trbL_2
Conjugal transfer protein trbL.
 
     0.946
trbI_2
Conjugal transfer protein trbI.
 
 
 
 0.930
trbG_2
Conjugal transfer protein trbG precursor.
 
   
 0.914
traG_1
Conjugal transfer coupling protein TraG.
  
  
 
0.901
Lgee_0504
Transglycosylase SLT domain protein.
 
   
 0.892
trbI_1
Conjugal transfer protein trbI.
 
 
 
 0.839
topA_2
DNA topoisomerase I.
     
 0.813
trbE_1
Conjugal transfer protein trbE precursor.
 
  
 0.806
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.