Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
traF_2Conjugal transfer peptidase TraF. (175 aa)    
Predicted Functional Partners:
traG_2
Conjugal transfer coupling protein TraG.
 
     0.950
traC_2
DNA primase TraC.
 
     0.950
trbL_2
Conjugal transfer protein trbL.
 
     0.942
trbI_2
Conjugal transfer protein trbI.
 
     0.908
trbG_2
Conjugal transfer protein trbG precursor.
 
     0.906
Lgee_0504
Transglycosylase SLT domain protein.
 
     0.896
topA_2
DNA topoisomerase I.
       0.802
trbC
Conjugal transfer protein TrbC.
 
   
 0.799
trbE_1
Conjugal transfer protein trbE precursor.
 
   
 0.794
trbE_2
Conjugal transfer protein TrbE.
 
   
 0.794
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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