Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traC_2DNA primase TraC. (703 aa)    
Predicted Functional Partners:
trbL_2
Conjugal transfer protein trbL.
 
     0.952
traF_2
Conjugal transfer peptidase TraF.
 
     0.950
traG_2
Conjugal transfer coupling protein TraG.
 
    0.949
trbG_2
Conjugal transfer protein trbG precursor.
 
     0.909
trbI_2
Conjugal transfer protein trbI.
 
     0.909
Lgee_0504
Transglycosylase SLT domain protein.
 
     0.896
trbD_1
Conjugal transfer protein trbD.
 
     0.802
traI_2
TraI protein.
 
     0.802
trbD_2
Conjugal transfer protein TrbD.
 
     0.802
traI_1
TraI protein.
 
     0.801
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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