Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_0533Leucine Rich repeats (2 copies). (1355 aa)    
Predicted Functional Partners:
Lgee_0291
Thaumatin domain-containing protein.
 
     0.770
Lgee_2002
Ankyrin repeats (3 copies).
  
     0.753
rhsA
Putative deoxyribonuclease RhsA.
 
     0.701
Lgee_1142
Adenosine deaminase.
  
     0.618
Lgee_0097
Serine/threonine-protein kinase.
  
     0.610
legL7_2
Leucine-rich repeat-containing protein.
  
     0.589
Lgee_0720
Leucine-rich repeat protein.
  
     0.565
yflS
Putative malate transporter YflS.
  
     0.543
Lgee_2130
AAA domain (dynein-related subfamily).
  
     0.501
Lgee_2235
U-box domain protein.
  
     0.474
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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