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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_0604TnpA transposase. (209 aa)    
Predicted Functional Partners:
Lgee_0605
TnpA transposase.
 
      0.892
Lgee_1611
Hypothetical protein.
  
     0.762
Lgee_1825
Hypothetical protein.
  
     0.760
Lgee_1903
Coiled-coil protein.
  
     0.755
Lgee_0444
Putative lipase.
  
     0.751
yjeA
Endo-1,4-beta-xylanase.
  
     0.746
Lgee_0099
Putative helicase/relaxase.
 
     0.728
pilZ
Type IV pilus assembly PilZ.
  
     0.722
Lgee_1211
IcmL-like protein.
  
     0.712
Lgee_2015
Type II/III secretion system protein.
  
     0.702
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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