Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_0616Glycosyl transferase family protein. (461 aa)    
Predicted Functional Partners:
Lgee_0618
TRP containing protein.
 
    0.900
Lgee_0617
HEAT repeat protein.
       0.863
Lgee_0709
Regulatory protein (GGDEF and EAL domains).
  
  
 0.836
parA
Sporulation initiation inhibitor protein Soj.
  
 
 0.740
Lgee_0575
Methyltransferase.
  
 
 0.670
Lgee_1967
Hypothetical protein.
  
 
 0.651
Lgee_1968
TPR repeat containing protein.
  
 
 0.651
Lgee_1507
Sensory box histidine kinase/response regulator.
 
 
 0.610
Lgee_0024
Sensory box histidine kinase/response regulator.
 
 
 0.603
asnS
Asparagine tRNA synthetase.
       0.563
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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