Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_0634Hypothetical protein. (124 aa)    
Predicted Functional Partners:
Lgee_0633
RES domain protein.
 
  
 0.992
Lgee_0630
Potassium efflux system KefA.
  
     0.589
Lgee_0632
Hypothetical protein.
       0.570
legA
Ankyrin-repeat containing protein, substrate of the Dot/Icm secretion system.
  
     0.488
bcp
Acetylpolyamine aminohydrolase.
  
     0.485
Lgee_0635
Hypothetical protein.
       0.482
Lgee_1150
Tyrosine phosphatase II superfamily transporter protein.
  
     0.446
Lgee_0156
Phosphotransferase enzyme family protein.
  
     0.441
Lgee_0176
Hypothetical protein.
  
     0.440
Lgee_0514
Phosphotransferase enzyme family protein.
  
     0.416
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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