ybbJ protein (Legionella geestiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ybbJ

Inner membrane protein YbbJ. (147 aa)

Predicted Functional Partners:

Lgee_0657

0.992

Lgee_0659

0.773

Lgee_0660

0.773

hflC

0.591

hflK

0.569

Lgee_0656

0.506

Lgee_1467

0.437

Your Current Organism:

Legionella geestiana

NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgee_0656	Lgee_0657	Lgee_0656	Lgee_0657	Cysteine dioxygenase type I.	Protease.	0.506
Lgee_0656	Lgee_0659	Lgee_0656	Lgee_0659	Cysteine dioxygenase type I.	Nuclease.	0.506
Lgee_0656	Lgee_0660	Lgee_0656	Lgee_0660	Cysteine dioxygenase type I.	Putative methyltransferase.	0.506
Lgee_0656	ybbJ	Lgee_0656	Lgee_0658	Cysteine dioxygenase type I.	Inner membrane protein YbbJ.	0.506
Lgee_0657	Lgee_0656	Lgee_0657	Lgee_0656	Protease.	Cysteine dioxygenase type I.	0.506
Lgee_0657	Lgee_0659	Lgee_0657	Lgee_0659	Protease.	Nuclease.	0.773
Lgee_0657	Lgee_0660	Lgee_0657	Lgee_0660	Protease.	Putative methyltransferase.	0.773
Lgee_0657	ybbJ	Lgee_0657	Lgee_0658	Protease.	Inner membrane protein YbbJ.	0.992
Lgee_0659	Lgee_0656	Lgee_0659	Lgee_0656	Nuclease.	Cysteine dioxygenase type I.	0.506
Lgee_0659	Lgee_0657	Lgee_0659	Lgee_0657	Nuclease.	Protease.	0.773
Lgee_0659	Lgee_0660	Lgee_0659	Lgee_0660	Nuclease.	Putative methyltransferase.	0.773
Lgee_0659	ybbJ	Lgee_0659	Lgee_0658	Nuclease.	Inner membrane protein YbbJ.	0.773
Lgee_0660	Lgee_0656	Lgee_0660	Lgee_0656	Putative methyltransferase.	Cysteine dioxygenase type I.	0.506
Lgee_0660	Lgee_0657	Lgee_0660	Lgee_0657	Putative methyltransferase.	Protease.	0.773
Lgee_0660	Lgee_0659	Lgee_0660	Lgee_0659	Putative methyltransferase.	Nuclease.	0.773
Lgee_0660	ybbJ	Lgee_0660	Lgee_0658	Putative methyltransferase.	Inner membrane protein YbbJ.	0.773
Lgee_1467	ybbJ	Lgee_1467	Lgee_0658	Phosphatidate cytidylyltransferase; Belongs to the CDS family.	Inner membrane protein YbbJ.	0.437
hflC	hflK	Lgee_0440	Lgee_0439	HflC protein; HflC and HflK could regulate a protease.	Protease subunit HflK; HflC and HflK could encode or regulate a protease.	0.998
hflC	ybbJ	Lgee_0440	Lgee_0658	HflC protein; HflC and HflK could regulate a protease.	Inner membrane protein YbbJ.	0.591
hflK	hflC	Lgee_0439	Lgee_0440	Protease subunit HflK; HflC and HflK could encode or regulate a protease.	HflC protein; HflC and HflK could regulate a protease.	0.998