oxdD protein (Legionella geestiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

oxdD

Oxalate decarboxylase OxdD. (387 aa)

Predicted Functional Partners:

mntH

0.825

aceB

0.817

sfcA

0.804

Lgee_2173

0.804

mdh

0.801

fumC

0.800

Lgee_2194

0.614

Lgee_1669

0.544

Lgee_0663

0.522

dsbB

0.522

Your Current Organism:

Legionella geestiana

NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgee_0663	dsbB	Lgee_0663	Lgee_0664	Cytochrome c5.	Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.	0.798
Lgee_0663	mntH	Lgee_0663	Lgee_0666	Cytochrome c5.	Divalent metal cation transporter MntH.	0.522
Lgee_0663	oxdD	Lgee_0663	Lgee_0665	Cytochrome c5.	Oxalate decarboxylase OxdD.	0.522
Lgee_1669	oxdD	Lgee_1669	Lgee_0665	FAD dependent oxidoreductase.	Oxalate decarboxylase OxdD.	0.544
Lgee_2173	aceB	Lgee_2173	Lgee_1352	NADP-dependent malic enzyme.	Malate synthase A.	0.912
Lgee_2173	fumC	Lgee_2173	Lgee_1890	NADP-dependent malic enzyme.	Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	0.946
Lgee_2173	mdh	Lgee_2173	Lgee_0402	NADP-dependent malic enzyme.	Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.	0.958
Lgee_2173	oxdD	Lgee_2173	Lgee_0665	NADP-dependent malic enzyme.	Oxalate decarboxylase OxdD.	0.804
Lgee_2173	sfcA	Lgee_2173	Lgee_0070	NADP-dependent malic enzyme.	Malate dehydrogenase.	0.900
Lgee_2194	oxdD	Lgee_2194	Lgee_0665	5-carboxyvanillate decarboxylase.	Oxalate decarboxylase OxdD.	0.614
aceB	Lgee_2173	Lgee_1352	Lgee_2173	Malate synthase A.	NADP-dependent malic enzyme.	0.912
aceB	fumC	Lgee_1352	Lgee_1890	Malate synthase A.	Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	0.920
aceB	mdh	Lgee_1352	Lgee_0402	Malate synthase A.	Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.	0.941
aceB	oxdD	Lgee_1352	Lgee_0665	Malate synthase A.	Oxalate decarboxylase OxdD.	0.817
aceB	sfcA	Lgee_1352	Lgee_0070	Malate synthase A.	Malate dehydrogenase.	0.912
dsbB	Lgee_0663	Lgee_0664	Lgee_0663	Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.	Cytochrome c5.	0.798
dsbB	mntH	Lgee_0664	Lgee_0666	Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.	Divalent metal cation transporter MntH.	0.610
dsbB	oxdD	Lgee_0664	Lgee_0665	Disulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.	Oxalate decarboxylase OxdD.	0.522
fumC	Lgee_2173	Lgee_1890	Lgee_2173	Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	NADP-dependent malic enzyme.	0.946
fumC	aceB	Lgee_1890	Lgee_1352	Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	Malate synthase A.	0.920