Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_0719Leucine-rich repeat protein. (465 aa)    
Predicted Functional Partners:
legL1
Gala protein type 1, 3 or 4.
  
     0.761
Lgee_1234
Leucine Rich repeats (2 copies).
  
     0.754
Lgee_2235
U-box domain protein.
  
     0.708
Lgee_1142
Adenosine deaminase.
  
     0.683
Lgee_1233
Leucine Rich repeats (2 copies).
  
     0.590
def
Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
     0.536
Lgee_0097
Serine/threonine-protein kinase.
  
     0.529
Lgee_0718
Hypothetical protein.
       0.527
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
  
     0.500
Lgee_1394
Zip family transporter.
  
     0.488
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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