Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgee_0725 | Lgee_0726 | Lgee_0725 | Lgee_0726 | Hypothetical protein. | Hypothetical protein. | 0.714 |
Lgee_0725 | Lgee_0727 | Lgee_0725 | Lgee_0727 | Hypothetical protein. | Peptidase, S24 family. | 0.664 |
Lgee_0725 | Lgee_0728 | Lgee_0725 | Lgee_0728 | Hypothetical protein. | Transposase. | 0.419 |
Lgee_0726 | Lgee_0725 | Lgee_0726 | Lgee_0725 | Hypothetical protein. | Hypothetical protein. | 0.714 |
Lgee_0726 | Lgee_0727 | Lgee_0726 | Lgee_0727 | Hypothetical protein. | Peptidase, S24 family. | 0.718 |
Lgee_0726 | Lgee_0728 | Lgee_0726 | Lgee_0728 | Hypothetical protein. | Transposase. | 0.448 |
Lgee_0727 | Lgee_0725 | Lgee_0727 | Lgee_0725 | Peptidase, S24 family. | Hypothetical protein. | 0.664 |
Lgee_0727 | Lgee_0726 | Lgee_0727 | Lgee_0726 | Peptidase, S24 family. | Hypothetical protein. | 0.718 |
Lgee_0727 | Lgee_0728 | Lgee_0727 | Lgee_0728 | Peptidase, S24 family. | Transposase. | 0.478 |
Lgee_0727 | comA | Lgee_0727 | Lgee_0747 | Peptidase, S24 family. | DNA uptake/competence protein ComA. | 0.480 |
Lgee_0728 | Lgee_0725 | Lgee_0728 | Lgee_0725 | Transposase. | Hypothetical protein. | 0.419 |
Lgee_0728 | Lgee_0726 | Lgee_0728 | Lgee_0726 | Transposase. | Hypothetical protein. | 0.448 |
Lgee_0728 | Lgee_0727 | Lgee_0728 | Lgee_0727 | Transposase. | Peptidase, S24 family. | 0.478 |
Lgee_0728 | Lgee_1255 | Lgee_0728 | Lgee_1255 | Transposase. | Integrase, catalytic region. | 0.683 |
Lgee_0728 | Lgee_1256 | Lgee_0728 | Lgee_1256 | Transposase. | Transposase IS3/IS911 family protein. | 0.437 |
Lgee_0728 | comA | Lgee_0728 | Lgee_0747 | Transposase. | DNA uptake/competence protein ComA. | 0.414 |
Lgee_1255 | Lgee_0728 | Lgee_1255 | Lgee_0728 | Integrase, catalytic region. | Transposase. | 0.683 |
Lgee_1255 | Lgee_1256 | Lgee_1255 | Lgee_1256 | Integrase, catalytic region. | Transposase IS3/IS911 family protein. | 0.926 |
Lgee_1256 | Lgee_0728 | Lgee_1256 | Lgee_0728 | Transposase IS3/IS911 family protein. | Transposase. | 0.437 |
Lgee_1256 | Lgee_1255 | Lgee_1256 | Lgee_1255 | Transposase IS3/IS911 family protein. | Integrase, catalytic region. | 0.926 |
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