icmP protein (Legionella geestiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

icmP

IcmP protein. (379 aa)

Predicted Functional Partners:

Lgee_1011

0.997

Lgee_1839

0.944

Lgee_1844

0.905

Lgee_1259

0.903

Lgee_1845

0.898

icmQ

0.887

Lgee_0237

0.885

Lgee_1838

0.853

dotC

0.836

Lgee_0773

0.797

Your Current Organism:

Legionella geestiana

NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgee_0237	Lgee_1011	Lgee_0237	Lgee_1011	Hypothetical protein.	Protein IcmO (DotL).	0.885
Lgee_0237	Lgee_1839	Lgee_0237	Lgee_1839	Hypothetical protein.	IcmJ protein.	0.885
Lgee_0237	icmP	Lgee_0237	Lgee_1012	Hypothetical protein.	IcmP protein.	0.885
Lgee_0773	Lgee_1011	Lgee_0773	Lgee_1011	Ankyrin repeat domain-containing protein.	Protein IcmO (DotL).	0.764
Lgee_0773	Lgee_1259	Lgee_0773	Lgee_1259	Ankyrin repeat domain-containing protein.	IcmT protein.	0.789
Lgee_0773	Lgee_1838	Lgee_0773	Lgee_1838	Ankyrin repeat domain-containing protein.	Protein IcmB (DotO).	0.747
Lgee_0773	Lgee_1844	Lgee_0773	Lgee_1844	Ankyrin repeat domain-containing protein.	IcmK protein.	0.722
Lgee_0773	Lgee_1845	Lgee_0773	Lgee_1845	Ankyrin repeat domain-containing protein.	Protein IcmL (DotI).	0.766
Lgee_0773	dotC	Lgee_0773	Lgee_2214	Ankyrin repeat domain-containing protein.	Defect in organelle trafficking lipoprotein DotC.	0.765
Lgee_0773	icmP	Lgee_0773	Lgee_1012	Ankyrin repeat domain-containing protein.	IcmP protein.	0.797
Lgee_1011	Lgee_0237	Lgee_1011	Lgee_0237	Protein IcmO (DotL).	Hypothetical protein.	0.885
Lgee_1011	Lgee_0773	Lgee_1011	Lgee_0773	Protein IcmO (DotL).	Ankyrin repeat domain-containing protein.	0.764
Lgee_1011	Lgee_1259	Lgee_1011	Lgee_1259	Protein IcmO (DotL).	IcmT protein.	0.906
Lgee_1011	Lgee_1838	Lgee_1011	Lgee_1838	Protein IcmO (DotL).	Protein IcmB (DotO).	0.818
Lgee_1011	Lgee_1839	Lgee_1011	Lgee_1839	Protein IcmO (DotL).	IcmJ protein.	0.957
Lgee_1011	Lgee_1844	Lgee_1011	Lgee_1844	Protein IcmO (DotL).	IcmK protein.	0.909
Lgee_1011	Lgee_1845	Lgee_1011	Lgee_1845	Protein IcmO (DotL).	Protein IcmL (DotI).	0.904
Lgee_1011	dotC	Lgee_1011	Lgee_2214	Protein IcmO (DotL).	Defect in organelle trafficking lipoprotein DotC.	0.872
Lgee_1011	icmP	Lgee_1011	Lgee_1012	Protein IcmO (DotL).	IcmP protein.	0.997
Lgee_1011	icmQ	Lgee_1011	Lgee_1013	Protein IcmO (DotL).	IcmQ protein.	0.802