Lgee_1032 protein (Legionella geestiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Lgee_1032

Hypothetical protein. (84 aa)

Predicted Functional Partners:

fliD

0.773

fliS

0.773

flaA

0.588

fliE

0.412

Your Current Organism:

Legionella geestiana

NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgee_1032	flaA	Lgee_1032	Lgee_1029	Hypothetical protein.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.588
Lgee_1032	fliD	Lgee_1032	Lgee_1030	Hypothetical protein.	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.773
Lgee_1032	fliE	Lgee_1032	Lgee_1028	Hypothetical protein.	Flagellar hook-basal body complex protein.	0.412
Lgee_1032	fliS	Lgee_1032	Lgee_1031	Hypothetical protein.	Flagellar protein FliS.	0.773
flaA	Lgee_1032	Lgee_1029	Lgee_1032	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Hypothetical protein.	0.588
flaA	fliD	Lgee_1029	Lgee_1030	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.999
flaA	fliE	Lgee_1029	Lgee_1028	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook-basal body complex protein.	0.903
flaA	fliS	Lgee_1029	Lgee_1031	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar protein FliS.	0.997
fliD	Lgee_1032	Lgee_1030	Lgee_1032	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Hypothetical protein.	0.773
fliD	flaA	Lgee_1030	Lgee_1029	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.999
fliD	fliE	Lgee_1030	Lgee_1028	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellar hook-basal body complex protein.	0.964
fliD	fliS	Lgee_1030	Lgee_1031	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellar protein FliS.	0.996
fliE	Lgee_1032	Lgee_1028	Lgee_1032	Flagellar hook-basal body complex protein.	Hypothetical protein.	0.412
fliE	flaA	Lgee_1028	Lgee_1029	Flagellar hook-basal body complex protein.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.903
fliE	fliD	Lgee_1028	Lgee_1030	Flagellar hook-basal body complex protein.	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.964
fliE	fliS	Lgee_1028	Lgee_1031	Flagellar hook-basal body complex protein.	Flagellar protein FliS.	0.976
fliS	Lgee_1032	Lgee_1031	Lgee_1032	Flagellar protein FliS.	Hypothetical protein.	0.773
fliS	flaA	Lgee_1031	Lgee_1029	Flagellar protein FliS.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.997
fliS	fliD	Lgee_1031	Lgee_1030	Flagellar protein FliS.	Flagellar hook associated protein 2 FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.996
fliS	fliE	Lgee_1031	Lgee_1028	Flagellar protein FliS.	Flagellar hook-basal body complex protein.	0.976