Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_1142Adenosine deaminase. (538 aa)    
Predicted Functional Partners:
Lgee_0184
Membrane protein.
  
     0.762
Lgee_0186
TraU protein.
  
     0.759
Lgee_0198
Bile acid beta-glucosidase.
  
     0.744
Lgee_0185
Tfp pilus assembly, pilus retraction ATPase PilT.
  
     0.743
Lgee_0187
Conserved protein of unknown function.
  
     0.734
Lgee_0189
Membrane protein.
  
     0.729
Lgee_1526
Leucine Rich repeats (2 copies).
  
     0.715
legL7_3
Leucine-rich repeat-containing protein.
  
     0.713
legL7_2
Leucine-rich repeat-containing protein.
  
     0.712
Lgee_0720
Leucine-rich repeat protein.
  
     0.699
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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