Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lgee_1241ABC transporter ATP binding protein. (303 aa)    
Predicted Functional Partners:
Lgee_1242
ABC transporter permease.
 
  
 0.986
Lgee_1485
ABC transporter permease.
 
  
 0.961
Lgee_1239
2OG-Fe(II) oxygenase.
       0.665
atpC
F1 sector of membrane-bound ATP synthase, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.647
atpD
ATP synthase F0F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.583
Lgee_1243
Hypothetical protein.
       0.576
gstA
Glutathione S-transferase.
 
 
   0.470
Lgee_1240
Hypothetical protein.
       0.465
Lgee_1483
Hemolysin D.
  
  
 0.423
abcT
Putative fused transporter subunits of ABC superfamily: ATP-binding component.
   
 0.411
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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