STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_1600Carbonic anhydrase. (246 aa)    
Predicted Functional Partners:
Lgee_1219
Sulfate transporter.
 
 
0.923
Lgee_1482
Transferase.
    
 
 0.791
Lgee_1068
Hypothetical protein; Belongs to the UPF0753 family.
  
    0.739
wrbA
Flavoprotein WrbA (Trp repressor binding protein); Belongs to the WrbA family.
       0.504
xth
Hypothetical protein.
       0.504
xth-2
Hypothetical protein.
       0.504
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
       0.504
Lgee_1599
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.501
ychM
Transporter.
  
  
 0.426
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.