Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_1709Universal stress protein A UspA. (146 aa)    
Predicted Functional Partners:
Lgee_1710
3'-5' exonuclease.
       0.773
acnA
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
 0.768
Lgee_1442
Methylated DNA protein cysteine S- methyltransferase.
   
    0.554
Lgee_1707
Hypothetical protein.
       0.497
Lgee_0264
Phosphate acetyl/butaryl transferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.495
Lgee_0024
Sensory box histidine kinase/response regulator.
     
 0.447
Lgee_1507
Sensory box histidine kinase/response regulator.
     
 0.447
yhbH
Ribosome-associated, sigma 54 modulation protein.
   
  
 0.424
Lgee_0831
Sensory box histidine kinase/response regulator.
  
  
 0.421
Lgee_1733
Sensory box histidine kinase/response regulator.
  
  
 0.421
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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