Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgee_1520 | Lgee_1732 | Lgee_1520 | Lgee_1732 | 2-acylglycerophosphoethanolamine acyltransferase. | Peptide synthetase, non-ribosomal. | 0.989 |
Lgee_1520 | Lgee_2122 | Lgee_1520 | Lgee_2122 | 2-acylglycerophosphoethanolamine acyltransferase. | Acetyltransferase. | 0.969 |
Lgee_1520 | acpP_1 | Lgee_1520 | Lgee_1697 | 2-acylglycerophosphoethanolamine acyltransferase. | Acyl carrier protein. | 0.810 |
Lgee_1520 | acpP_2 | Lgee_1520 | Lgee_1794 | 2-acylglycerophosphoethanolamine acyltransferase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.810 |
Lgee_1520 | fabD_1 | Lgee_1520 | Lgee_1796 | 2-acylglycerophosphoethanolamine acyltransferase. | Malonyl CoA-ACP transacylase. | 0.503 |
Lgee_1520 | fabD_2 | Lgee_1520 | Lgee_2070 | 2-acylglycerophosphoethanolamine acyltransferase. | Malonyl CoA-ACP transacylase. | 0.503 |
Lgee_1520 | rplM | Lgee_1520 | Lgee_2192 | 2-acylglycerophosphoethanolamine acyltransferase. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.788 |
Lgee_1520 | rplU | Lgee_1520 | Lgee_1454 | 2-acylglycerophosphoethanolamine acyltransferase. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.702 |
Lgee_1732 | Lgee_1520 | Lgee_1732 | Lgee_1520 | Peptide synthetase, non-ribosomal. | 2-acylglycerophosphoethanolamine acyltransferase. | 0.989 |
Lgee_1732 | Lgee_2122 | Lgee_1732 | Lgee_2122 | Peptide synthetase, non-ribosomal. | Acetyltransferase. | 0.999 |
Lgee_1732 | acpP_1 | Lgee_1732 | Lgee_1697 | Peptide synthetase, non-ribosomal. | Acyl carrier protein. | 0.987 |
Lgee_1732 | acpP_2 | Lgee_1732 | Lgee_1794 | Peptide synthetase, non-ribosomal. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.987 |
Lgee_1732 | fabD_1 | Lgee_1732 | Lgee_1796 | Peptide synthetase, non-ribosomal. | Malonyl CoA-ACP transacylase. | 0.978 |
Lgee_1732 | fabD_2 | Lgee_1732 | Lgee_2070 | Peptide synthetase, non-ribosomal. | Malonyl CoA-ACP transacylase. | 0.983 |
Lgee_1732 | fadD-1 | Lgee_1732 | Lgee_0241 | Peptide synthetase, non-ribosomal. | Long chain fatty acid-CoA ligase. | 0.989 |
Lgee_1732 | nuoC | Lgee_1732 | Lgee_0337 | Peptide synthetase, non-ribosomal. | NADH dehydrogenase I chain C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. | 0.972 |
Lgee_1732 | rplM | Lgee_1732 | Lgee_2192 | Peptide synthetase, non-ribosomal. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.961 |
Lgee_1732 | rplU | Lgee_1732 | Lgee_1454 | Peptide synthetase, non-ribosomal. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.970 |
Lgee_2122 | Lgee_1520 | Lgee_2122 | Lgee_1520 | Acetyltransferase. | 2-acylglycerophosphoethanolamine acyltransferase. | 0.969 |
Lgee_2122 | Lgee_1732 | Lgee_2122 | Lgee_1732 | Acetyltransferase. | Peptide synthetase, non-ribosomal. | 0.999 |
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