Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgee_0780 | Lgee_1732 | Lgee_0780 | Lgee_1732 | Enoyl reductase. | Peptide synthetase, non-ribosomal. | 0.856 |
Lgee_0780 | Lgee_2122 | Lgee_0780 | Lgee_2122 | Enoyl reductase. | Acetyltransferase. | 0.914 |
Lgee_0780 | acpP_2 | Lgee_0780 | Lgee_1794 | Enoyl reductase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.857 |
Lgee_0780 | bioH | Lgee_0780 | Lgee_1738 | Enoyl reductase. | Biotin biosynthesis protein BioH. | 0.915 |
Lgee_1732 | Lgee_0780 | Lgee_1732 | Lgee_0780 | Peptide synthetase, non-ribosomal. | Enoyl reductase. | 0.856 |
Lgee_1732 | Lgee_2122 | Lgee_1732 | Lgee_2122 | Peptide synthetase, non-ribosomal. | Acetyltransferase. | 0.999 |
Lgee_1732 | acpP_2 | Lgee_1732 | Lgee_1794 | Peptide synthetase, non-ribosomal. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.987 |
Lgee_1732 | bioA | Lgee_1732 | Lgee_1741 | Peptide synthetase, non-ribosomal. | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.519 |
Lgee_1732 | bioC | Lgee_1732 | Lgee_1377 | Peptide synthetase, non-ribosomal. | Biotin synthase BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. | 0.504 |
Lgee_1732 | bioF | Lgee_1732 | Lgee_1739 | Peptide synthetase, non-ribosomal. | 8-amino-7-oxononanoate synthase. | 0.527 |
Lgee_1732 | bioH | Lgee_1732 | Lgee_1738 | Peptide synthetase, non-ribosomal. | Biotin biosynthesis protein BioH. | 0.715 |
Lgee_2122 | Lgee_0780 | Lgee_2122 | Lgee_0780 | Acetyltransferase. | Enoyl reductase. | 0.914 |
Lgee_2122 | Lgee_1732 | Lgee_2122 | Lgee_1732 | Acetyltransferase. | Peptide synthetase, non-ribosomal. | 0.999 |
Lgee_2122 | acpP_2 | Lgee_2122 | Lgee_1794 | Acetyltransferase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.810 |
Lgee_2122 | bioA | Lgee_2122 | Lgee_1741 | Acetyltransferase. | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.486 |
Lgee_2122 | bioC | Lgee_2122 | Lgee_1377 | Acetyltransferase. | Biotin synthase BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. | 0.412 |
Lgee_2122 | bioD | Lgee_2122 | Lgee_1737 | Acetyltransferase. | Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring. | 0.485 |
Lgee_2122 | bioF | Lgee_2122 | Lgee_1739 | Acetyltransferase. | 8-amino-7-oxononanoate synthase. | 0.624 |
Lgee_2122 | bioH | Lgee_2122 | Lgee_1738 | Acetyltransferase. | Biotin biosynthesis protein BioH. | 0.852 |
acpP_2 | Lgee_0780 | Lgee_1794 | Lgee_0780 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Enoyl reductase. | 0.857 |
page 1 of 4