Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lgee_1768Protein with a bacterial immunoglobulin-like domain protein. (501 aa)    
Predicted Functional Partners:
Lgee_1767
Hypothetical protein.
       0.740
dotG
IcmE/DotG protein.
  
     0.679
Lgee_0203
Conserved protein of unknown function.
  
     0.658
Lgee_2005
Protein-tyrosine phosphatase.
  
     0.658
Lgee_0839
Opacity protein-like surface antigen.
  
     0.638
Lgee_2280
IcmF.
  
     0.628
lvrA2
Vir region protein.
  
     0.586
Lgee_0891
Putative membrane protein YdgA-like protein.
  
     0.573
lvrA3
Vir region protein.
  
     0.551
Lgee_0741
Putative prophage repressor CI-like protein.
  
     0.519
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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