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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lgee_1809Lycopene cyclase protein. (373 aa)    
Predicted Functional Partners:
crtI
Phytoene desaturase (lycopene-forming).
 
 
 0.995
crtB
All-trans-phytoene synthase.
 
  
 0.941
Lgee_1813
Green-light absorbing proteorhodopsin precursor.
 
   
 0.915
Lgee_1812
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.833
etfB
Electron transfer flavoprotein subunit beta.
  
 
 0.817
blh
Beta-carotene 15,15'-dioxygenase; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
       0.802
Lgee_1570
Electron transferring flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.785
iolCB
IolC/IolB transferase kinase protein.
       0.625
iolG_2
Myo-inositol-2-dehydrogenase.
       0.625
Lgee_1807
Sugar-proton symporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
    0.625
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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