Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_1841IcmC (DotE). (195 aa)    
Predicted Functional Partners:
Lgee_1842
Protein IcmG (DotF).
     
 0.889
Lgee_1845
Protein IcmL (DotI).
     
 0.885
Lgee_1844
IcmK protein.
     
 0.878
icmM/dotJ
Component of the Dot/Icm secretion system, predicted inner membrane protein.
     
 0.872
lphA
LphA (DotK).
       0.837
icmD
IcmD (DotP).
     
 0.835
dotG
IcmE/DotG protein.
     
 0.820
Lgee_1839
IcmJ protein.
     
 0.717
icmP
IcmP protein.
     
 0.574
Lgee_1011
Protein IcmO (DotL).
     
 0.539
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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