Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_1844IcmK protein. (356 aa)    
Predicted Functional Partners:
dotG
IcmE/DotG protein.
 
 
 
 0.992
Lgee_1845
Protein IcmL (DotI).
 
   
 0.978
Lgee_1842
Protein IcmG (DotF).
   
 
 0.977
dotC
Defect in organelle trafficking lipoprotein DotC.
 
 
 
 0.967
lphA
LphA (DotK).
   
   0.966
Lgee_2211
DotA.
 
 
   0.940
Lgee_1011
Protein IcmO (DotL).
 
   
 0.909
icmP
IcmP protein.
 
   
 0.905
Lgee_1841
IcmC (DotE).
     
 0.878
icmM/dotJ
Component of the Dot/Icm secretion system, predicted inner membrane protein.
     
 0.876
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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