Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_1900Histone methylation protein DOT1. (240 aa)    
Predicted Functional Partners:
Lgee_1899
Hypothetical protein.
       0.863
hipB
Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.755
Lgee_1394
Zip family transporter.
 
     0.725
dotG
IcmE/DotG protein.
  
     0.690
Lgee_2211
DotA.
  
     0.677
Lgee_1211
IcmL-like protein.
  
     0.671
Lgee_0891
Putative membrane protein YdgA-like protein.
 
     0.664
Lgee_0203
Conserved protein of unknown function.
  
     0.652
enhA_5
Enhanced entry protein EnhA.
  
     0.643
lvrA2
Vir region protein.
  
     0.629
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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