Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_1903Coiled-coil protein. (539 aa)    
Predicted Functional Partners:
dcd
Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP.
       0.826
Lgee_0604
TnpA transposase.
  
     0.755
Lgee_1611
Hypothetical protein.
  
     0.744
Lgee_2039
Inner membrane protein AmpE.
  
     0.736
Lgee_1825
Hypothetical protein.
  
     0.729
yjeA
Endo-1,4-beta-xylanase.
  
     0.727
enhA_5
Enhanced entry protein EnhA.
  
     0.726
Lgee_1211
IcmL-like protein.
  
   0.721
Lgee_1838
Protein IcmB (DotO).
  
    0.704
Lgee_1722
Lipoprotein VacJ-like protein.
    
   0.688
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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