Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_1965Hypothetical protein. (160 aa)    
Predicted Functional Partners:
Lgee_1966
Hypothetical protein.
 
    0.967
Lgee_1967
Hypothetical protein.
 
     0.967
Lgee_1969
KQDN repeat-containing protein.
 
   
 0.967
Lgee_1964
Hypothetical protein.
 
    0.953
Lgee_1968
TPR repeat containing protein.
 
     0.951
Lgee_1963
ATPase MoxR.
 
    0.937
Lgee_0023
Hypothetical protein.
  
     0.644
Lgee_1962
Hypothetical protein.
       0.581
Lgee_1970
Hypothetical protein.
       0.532
Lgee_1495
Hypothetical protein.
       0.504
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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