Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgee_1986 | cyc4 | Lgee_1986 | Lgee_1985 | Hypothetical protein. | Cytochrome c4. | 0.535 |
Lgee_1986 | dsbA | Lgee_1986 | Lgee_1984 | Hypothetical protein. | Thiol:disulfide interchange protein precursor DsbA. | 0.535 |
Lgee_1986 | engB | Lgee_1986 | Lgee_1987 | Hypothetical protein. | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.424 |
cyc4 | Lgee_1986 | Lgee_1985 | Lgee_1986 | Cytochrome c4. | Hypothetical protein. | 0.535 |
cyc4 | dsbA | Lgee_1985 | Lgee_1984 | Cytochrome c4. | Thiol:disulfide interchange protein precursor DsbA. | 0.860 |
cyc4 | engB | Lgee_1985 | Lgee_1987 | Cytochrome c4. | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.415 |
dsbA | Lgee_1986 | Lgee_1984 | Lgee_1986 | Thiol:disulfide interchange protein precursor DsbA. | Hypothetical protein. | 0.535 |
dsbA | cyc4 | Lgee_1984 | Lgee_1985 | Thiol:disulfide interchange protein precursor DsbA. | Cytochrome c4. | 0.860 |
dsbA | engB | Lgee_1984 | Lgee_1987 | Thiol:disulfide interchange protein precursor DsbA. | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.415 |
engB | Lgee_1986 | Lgee_1987 | Lgee_1986 | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | Hypothetical protein. | 0.424 |
engB | cyc4 | Lgee_1987 | Lgee_1985 | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | Cytochrome c4. | 0.415 |
engB | dsbA | Lgee_1987 | Lgee_1984 | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | Thiol:disulfide interchange protein precursor DsbA. | 0.415 |