Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgee_2024 | Lgee_2025 | Lgee_2024 | Lgee_2025 | Hypothetical protein. | Rossmann-like domain protein. | 0.556 |
Lgee_2025 | Lgee_2024 | Lgee_2025 | Lgee_2024 | Rossmann-like domain protein. | Hypothetical protein. | 0.556 |
Lgee_2025 | Lgee_2026 | Lgee_2025 | Lgee_2026 | Rossmann-like domain protein. | DNA polymerase, beta-like region. | 0.531 |
Lgee_2025 | Lgee_2027 | Lgee_2025 | Lgee_2027 | Rossmann-like domain protein. | Sulfur transferase; Belongs to the UPF0176 family. | 0.406 |
Lgee_2025 | panB | Lgee_2025 | Lgee_0682 | Rossmann-like domain protein. | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | 0.610 |
Lgee_2025 | panC | Lgee_2025 | Lgee_0681 | Rossmann-like domain protein. | Pantoate-beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.673 |
Lgee_2026 | Lgee_2025 | Lgee_2026 | Lgee_2025 | DNA polymerase, beta-like region. | Rossmann-like domain protein. | 0.531 |
Lgee_2026 | Lgee_2027 | Lgee_2026 | Lgee_2027 | DNA polymerase, beta-like region. | Sulfur transferase; Belongs to the UPF0176 family. | 0.572 |
Lgee_2027 | Lgee_2025 | Lgee_2027 | Lgee_2025 | Sulfur transferase; Belongs to the UPF0176 family. | Rossmann-like domain protein. | 0.406 |
Lgee_2027 | Lgee_2026 | Lgee_2027 | Lgee_2026 | Sulfur transferase; Belongs to the UPF0176 family. | DNA polymerase, beta-like region. | 0.572 |
panB | Lgee_2025 | Lgee_0682 | Lgee_2025 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | Rossmann-like domain protein. | 0.610 |
panB | panC | Lgee_0682 | Lgee_0681 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | Pantoate-beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.999 |
panC | Lgee_2025 | Lgee_0681 | Lgee_2025 | Pantoate-beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | Rossmann-like domain protein. | 0.673 |
panC | panB | Lgee_0681 | Lgee_0682 | Pantoate-beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | 0.999 |