Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_2041Neurogenic locus notch like protein precursor. (111 aa)    
Predicted Functional Partners:
dotG
IcmE/DotG protein.
    
   0.857
Lgee_0549
Hypothetical protein.
    
   0.787
Lgee_1842
Protein IcmG (DotF).
    
   0.787
Lgee_1844
IcmK protein.
    
   0.787
lphA
LphA (DotK).
    
   0.787
Lgee_2180
Outer membrane protein, OmpA family protein.
    
   0.787
dotC
Defect in organelle trafficking lipoprotein DotC.
    
   0.787
dotD
Lipoprotein DotD.
    
   0.787
potA
Spermidine/putrescine ABC transporter, ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
       0.768
potB
Spermidine/putrescine ABC transporter permease PotB.
       0.768
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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