Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgee_0488 | tolA | Lgee_0488 | Lgee_2107 | Hypothetical protein. | TolA colicin import membrane protein. | 0.636 |
Lgee_0488 | tolQ | Lgee_0488 | Lgee_2109 | Hypothetical protein. | Biopolymer transport protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.408 |
Lgee_1125 | Lgee_1611 | Lgee_1125 | Lgee_1611 | ProQ-like, activator of ProP osmoprotectant transporter; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | Hypothetical protein. | 0.671 |
Lgee_1125 | Lgee_2039 | Lgee_1125 | Lgee_2039 | ProQ-like, activator of ProP osmoprotectant transporter; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | Inner membrane protein AmpE. | 0.461 |
Lgee_1125 | tolA | Lgee_1125 | Lgee_2107 | ProQ-like, activator of ProP osmoprotectant transporter; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | TolA colicin import membrane protein. | 0.643 |
Lgee_1611 | Lgee_1125 | Lgee_1611 | Lgee_1125 | Hypothetical protein. | ProQ-like, activator of ProP osmoprotectant transporter; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.671 |
Lgee_1611 | Lgee_1994 | Lgee_1611 | Lgee_1994 | Hypothetical protein. | ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.725 |
Lgee_1611 | Lgee_2039 | Lgee_1611 | Lgee_2039 | Hypothetical protein. | Inner membrane protein AmpE. | 0.593 |
Lgee_1611 | tolA | Lgee_1611 | Lgee_2107 | Hypothetical protein. | TolA colicin import membrane protein. | 0.623 |
Lgee_1994 | Lgee_1611 | Lgee_1994 | Lgee_1611 | ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | Hypothetical protein. | 0.725 |
Lgee_1994 | Lgee_2039 | Lgee_1994 | Lgee_2039 | ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | Inner membrane protein AmpE. | 0.492 |
Lgee_1994 | tolA | Lgee_1994 | Lgee_2107 | ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | TolA colicin import membrane protein. | 0.660 |
Lgee_2039 | Lgee_1125 | Lgee_2039 | Lgee_1125 | Inner membrane protein AmpE. | ProQ-like, activator of ProP osmoprotectant transporter; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.461 |
Lgee_2039 | Lgee_1611 | Lgee_2039 | Lgee_1611 | Inner membrane protein AmpE. | Hypothetical protein. | 0.593 |
Lgee_2039 | Lgee_1994 | Lgee_2039 | Lgee_1994 | Inner membrane protein AmpE. | ProQ; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.492 |
Lgee_2039 | tolA | Lgee_2039 | Lgee_2107 | Inner membrane protein AmpE. | TolA colicin import membrane protein. | 0.632 |
Lgee_2105 | ruvB | Lgee_2105 | Lgee_2110 | 3'-nucleotidase/nuclease. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.744 |
Lgee_2105 | tolA | Lgee_2105 | Lgee_2107 | 3'-nucleotidase/nuclease. | TolA colicin import membrane protein. | 0.796 |
Lgee_2105 | tolB | Lgee_2105 | Lgee_2106 | 3'-nucleotidase/nuclease. | TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.805 |
Lgee_2105 | tolQ | Lgee_2105 | Lgee_2109 | 3'-nucleotidase/nuclease. | Biopolymer transport protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.805 |
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