Lgee_2115 protein (Legionella geestiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Lgee_2115

NAD-glutamate dehydrogenase. (1624 aa)

Predicted Functional Partners:

glnA

0.937

putA

0.921

aatA_1

0.908

Lgee_1872

0.908

glsA

0.900

astB

0.884

sucA

0.867

prpC

0.848

gltA

0.848

korA

0.846

Your Current Organism:

Legionella geestiana

NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgee_1872	Lgee_2115	Lgee_1872	Lgee_2115	Aspartate aminotransferase.	NAD-glutamate dehydrogenase.	0.908
Lgee_1872	aatA_1	Lgee_1872	Lgee_0830	Aspartate aminotransferase.	Aspartate aminotransferase A.	0.924
Lgee_1872	gltA	Lgee_1872	Lgee_2092	Aspartate aminotransferase.	Citrate synthase; Belongs to the citrate synthase family.	0.817
Lgee_1872	korA	Lgee_1872	Lgee_1158	Aspartate aminotransferase.	2-oxoglutarate ferredoxin oxidoreductase subunit alpha.	0.854
Lgee_1872	prpC	Lgee_1872	Lgee_1803	Aspartate aminotransferase.	2-methylcitrate synthase; Belongs to the citrate synthase family.	0.817
Lgee_1872	putA	Lgee_1872	Lgee_1123	Aspartate aminotransferase.	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.	0.919
Lgee_1872	sucA	Lgee_1872	Lgee_0693	Aspartate aminotransferase.	2-oxoglutarate dehydrogenase E1.	0.800
Lgee_2115	Lgee_1872	Lgee_2115	Lgee_1872	NAD-glutamate dehydrogenase.	Aspartate aminotransferase.	0.908
Lgee_2115	aatA_1	Lgee_2115	Lgee_0830	NAD-glutamate dehydrogenase.	Aspartate aminotransferase A.	0.908
Lgee_2115	astB	Lgee_2115	Lgee_1076	NAD-glutamate dehydrogenase.	Succinylarginine dihydrolase; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).	0.884
Lgee_2115	glnA	Lgee_2115	Lgee_0058	NAD-glutamate dehydrogenase.	Glutamine synthetase.	0.937
Lgee_2115	glsA	Lgee_2115	Lgee_1530	NAD-glutamate dehydrogenase.	Glutaminase; Belongs to the glutaminase family.	0.900
Lgee_2115	gltA	Lgee_2115	Lgee_2092	NAD-glutamate dehydrogenase.	Citrate synthase; Belongs to the citrate synthase family.	0.848
Lgee_2115	korA	Lgee_2115	Lgee_1158	NAD-glutamate dehydrogenase.	2-oxoglutarate ferredoxin oxidoreductase subunit alpha.	0.846
Lgee_2115	prpC	Lgee_2115	Lgee_1803	NAD-glutamate dehydrogenase.	2-methylcitrate synthase; Belongs to the citrate synthase family.	0.848
Lgee_2115	putA	Lgee_2115	Lgee_1123	NAD-glutamate dehydrogenase.	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.	0.921
Lgee_2115	sucA	Lgee_2115	Lgee_0693	NAD-glutamate dehydrogenase.	2-oxoglutarate dehydrogenase E1.	0.867
aatA_1	Lgee_1872	Lgee_0830	Lgee_1872	Aspartate aminotransferase A.	Aspartate aminotransferase.	0.924
aatA_1	Lgee_2115	Lgee_0830	Lgee_2115	Aspartate aminotransferase A.	NAD-glutamate dehydrogenase.	0.908
aatA_1	gltA	Lgee_0830	Lgee_2092	Aspartate aminotransferase A.	Citrate synthase; Belongs to the citrate synthase family.	0.817