Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_2132Hypothetical protein. (165 aa)    
Predicted Functional Partners:
Lgee_2131
Hypothetical protein.
       0.773
Lgee_2086
Hypothetical protein.
  
     0.716
Lgee_2211
DotA.
  
     0.714
Lgee_2260
Transport protein.
  
     0.694
Lgee_0773
Ankyrin repeat domain-containing protein.
  
     0.693
Lgee_1845
Protein IcmL (DotI).
  
     0.673
enhA_2
Enhanced entry protein EnhA.
  
     0.664
enhA_5
Enhanced entry protein EnhA.
  
     0.664
dotC
Defect in organelle trafficking lipoprotein DotC.
  
     0.655
Lgee_1259
IcmT protein.
  
     0.651
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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