Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_2135Hypothetical protein. (199 aa)    
Predicted Functional Partners:
Lgee_0584
Transmembrane protein.
      
 0.671
Lgee_0773
Ankyrin repeat domain-containing protein.
      
 0.605
icmS
Protein IcmS.
      
 0.605
icmW
Intracellular multiplication protein IcmW.
      
 0.605
Lgee_0774
Putative Smr domain protein.
      
 0.541
Lgee_0561
Aminopeptidase.
       0.504
Lgee_2136
Hypothetical protein.
       0.464
Lgee_2137
Hypothetical protein.
       0.464
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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