STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_21945-carboxyvanillate decarboxylase. (351 aa)    
Predicted Functional Partners:
Lgee_1591
Oxidoreductase.
 
  
 0.666
oxdD
Oxalate decarboxylase OxdD.
  
     0.614
Lgee_1732
Peptide synthetase, non-ribosomal.
     
 0.513
Lgee_2195
Hypothetical protein.
       0.503
iolG_1
Myo-inositol-2-dehydrogenase.
  
  
 0.465
Lgee_1612
AMPC cephalosporinase.
  
     0.457
Lgee_1669
FAD dependent oxidoreductase.
 
  
 0.433
hmgA
Homogentisate 1,2-dioxygenase.
  
    0.429
petA
Ubiquinol--cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
     
 0.417
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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