Lgee_2226 protein (Legionella geestiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Lgee_2226

ATP-binding transmembrane ABC transporter. (588 aa)

Predicted Functional Partners:

Lgee_2122

0.865

Lgee_1732

0.728

Lgee_2225

0.689

Lgee_0178

0.573

Lgee_1251

0.569

potA

0.540

bcp

0.519

dnaK

0.514

aroK-5

0.471

uup_2

0.464

Your Current Organism:

Legionella geestiana

NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgee_0178	Lgee_2226	Lgee_0178	Lgee_2226	ABC transporter ATP binding transmembrane protein.	ATP-binding transmembrane ABC transporter.	0.573
Lgee_0178	dnaK	Lgee_0178	Lgee_1429	ABC transporter ATP binding transmembrane protein.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.601
Lgee_0178	uup_2	Lgee_0178	Lgee_0161	ABC transporter ATP binding transmembrane protein.	Putative fused transporter subunits of ABC superfamily: ATP-binding component.	0.442
Lgee_1251	Lgee_1732	Lgee_1251	Lgee_1732	Enterobactin/ferric enterobactin esterase.	Peptide synthetase, non-ribosomal.	0.925
Lgee_1251	Lgee_2122	Lgee_1251	Lgee_2122	Enterobactin/ferric enterobactin esterase.	Acetyltransferase.	0.613
Lgee_1251	Lgee_2226	Lgee_1251	Lgee_2226	Enterobactin/ferric enterobactin esterase.	ATP-binding transmembrane ABC transporter.	0.569
Lgee_1732	Lgee_1251	Lgee_1732	Lgee_1251	Peptide synthetase, non-ribosomal.	Enterobactin/ferric enterobactin esterase.	0.925
Lgee_1732	Lgee_2122	Lgee_1732	Lgee_2122	Peptide synthetase, non-ribosomal.	Acetyltransferase.	0.997
Lgee_1732	Lgee_2226	Lgee_1732	Lgee_2226	Peptide synthetase, non-ribosomal.	ATP-binding transmembrane ABC transporter.	0.728
Lgee_1732	dnaK	Lgee_1732	Lgee_1429	Peptide synthetase, non-ribosomal.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.654
Lgee_2122	Lgee_1251	Lgee_2122	Lgee_1251	Acetyltransferase.	Enterobactin/ferric enterobactin esterase.	0.613
Lgee_2122	Lgee_1732	Lgee_2122	Lgee_1732	Acetyltransferase.	Peptide synthetase, non-ribosomal.	0.997
Lgee_2122	Lgee_2226	Lgee_2122	Lgee_2226	Acetyltransferase.	ATP-binding transmembrane ABC transporter.	0.865
Lgee_2122	dnaK	Lgee_2122	Lgee_1429	Acetyltransferase.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.877
Lgee_2122	uup_2	Lgee_2122	Lgee_0161	Acetyltransferase.	Putative fused transporter subunits of ABC superfamily: ATP-binding component.	0.458
Lgee_2225	Lgee_2226	Lgee_2225	Lgee_2226	Aminoglycoside phosphotransferase.	ATP-binding transmembrane ABC transporter.	0.689
Lgee_2225	aroK-5	Lgee_2225	Lgee_2224	Aminoglycoside phosphotransferase.	Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.	0.525
Lgee_2226	Lgee_0178	Lgee_2226	Lgee_0178	ATP-binding transmembrane ABC transporter.	ABC transporter ATP binding transmembrane protein.	0.573
Lgee_2226	Lgee_1251	Lgee_2226	Lgee_1251	ATP-binding transmembrane ABC transporter.	Enterobactin/ferric enterobactin esterase.	0.569
Lgee_2226	Lgee_1732	Lgee_2226	Lgee_1732	ATP-binding transmembrane ABC transporter.	Peptide synthetase, non-ribosomal.	0.728