Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lgee_2235U-box domain protein. (636 aa)    
Predicted Functional Partners:
Lgee_0719
Leucine-rich repeat protein.
  
     0.708
legL7_2
Leucine-rich repeat-containing protein.
  
     0.708
legL1
Gala protein type 1, 3 or 4.
  
     0.706
Lgee_0720
Leucine-rich repeat protein.
  
     0.668
Lgee_1234
Leucine Rich repeats (2 copies).
  
     0.636
Lgee_1233
Leucine Rich repeats (2 copies).
  
     0.504
legL7_3
Leucine-rich repeat-containing protein.
  
     0.478
Lgee_2236
GNAT family acetyltransferase.
       0.476
Lgee_0533
Leucine Rich repeats (2 copies).
  
     0.474
Lgee_2099
DegP protease.
  
 
   0.458
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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