Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_2245Hypothetical protein. (512 aa)    
Predicted Functional Partners:
ftsK
Cell division protein FtsK.
    
 
 0.781
rhsA
Putative deoxyribonuclease RhsA.
  
 
 0.512
smc_1
Chromosome partition protein smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
 
 0.491
Lgee_2031
Hypothetical protein.
   
 
 0.491
Lgee_2244
Hypothetical protein.
       0.487
Lgee_0276
Putative glucosyltransferase Lgt1.
    
 
 0.466
tolA
TolA colicin import membrane protein.
    
 
 0.466
Lgee_0303
Hypothetical protein.
   
   0.463
ctpA
Carboxy-terminal protease; Belongs to the peptidase S41A family.
   
   0.463
parA
Sporulation initiation inhibitor protein Soj.
    
   0.463
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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