Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_2247Amino acid antiporter. (458 aa)    
Predicted Functional Partners:
Lgee_0302
Amino acid antiporter.
  
  
 
0.916
gadC
Glutamate/gamma-aminobutyrate antiporter.
  
  
 
0.912
hutH
Histidine ammonia lyase.
       0.752
Lgee_2246
Chloramphenicol acetyltransferase.
       0.576
Lgee_2179
Tyrosine-specific transport protein.
  
 
   0.555
Lgee_2178
Tyrosine-specific transport protein.
  
 
   0.554
Lgee_2249
Periplasmic protein.
       0.515
Lgee_2250
Glycosyl hydrolase.
  
    0.414
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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