Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lgee_2272Siderophore biosynthetic enzyme FrgA. (581 aa)    
Predicted Functional Partners:
Lgee_2271
Multidrug resistance efflux pump.
 
    0.896
Lgee_2270
Drug resistance transporter, Bcr/CflA.
       0.863
Lgee_2269
Outer membrane protein OmpH; Belongs to the skp family.
       0.668
Lgee_1732
Peptide synthetase, non-ribosomal.
  
  
 0.639
Lgee_0604
TnpA transposase.
  
     0.536
Lgee_0546
Hypothetical protein.
  
     0.485
yjeA
Endo-1,4-beta-xylanase.
  
     0.460
Lgee_1611
Hypothetical protein.
  
     0.453
Lgee_0156
Phosphotransferase enzyme family protein.
  
     0.443
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.437
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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