STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lgee_2280IcmF. (971 aa)    
Predicted Functional Partners:
Lgee_2279
IcmH (DotU).
 
 
 0.996
cpxR
Transcriptional regulatory protein CpxR.
      
 0.858
Lgee_2210
IcmV.
      
 0.858
dotG
IcmE/DotG protein.
 
   
 0.844
Lgee_0203
Conserved protein of unknown function.
  
     0.764
lvrA2
Vir region protein.
  
     0.762
lvrA3
Vir region protein.
  
     0.760
Lgee_0891
Putative membrane protein YdgA-like protein.
  
     0.747
dotC
Defect in organelle trafficking lipoprotein DotC.
  
   
 0.742
Lgee_2005
Protein-tyrosine phosphatase.
  
     0.698
Your Current Organism:
Legionella geestiana
NCBI taxonomy Id: 45065
Other names: ATCC 49504, CCUG 44893, CIP 105569, DSM 21217, L. geestiana, NCTC 12373
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.