hspA_3 protein (Legionella gratiana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hspA_3

Heat shock protein; Belongs to the small heat shock protein (HSP20) family. (163 aa)

Predicted Functional Partners:

Lgra_2523

0.788

clpB

0.530

clpA

0.530

Lgra_0010

0.479

dnaK

0.471

Your Current Organism:

Legionella gratiana

NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lgra_0010	clpA	Lgra_0010	Lgra_3281	Heat shock hsp20; Belongs to the small heat shock protein (HSP20) family.	ATP binding protease component ClpA; Belongs to the ClpA/ClpB family.	0.528
Lgra_0010	clpB	Lgra_0010	Lgra_2424	Heat shock hsp20; Belongs to the small heat shock protein (HSP20) family.	Endopeptidase Clp ATP-binding subunit B; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.	0.528
Lgra_0010	dnaK	Lgra_0010	Lgra_2296	Heat shock hsp20; Belongs to the small heat shock protein (HSP20) family.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.460
Lgra_0010	hspA_3	Lgra_0010	Lgra_0009	Heat shock hsp20; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein; Belongs to the small heat shock protein (HSP20) family.	0.479
Lgra_2523	clpA	Lgra_2523	Lgra_3281	Heat shock protein, Hsp20 family; Belongs to the small heat shock protein (HSP20) family.	ATP binding protease component ClpA; Belongs to the ClpA/ClpB family.	0.530
Lgra_2523	clpB	Lgra_2523	Lgra_2424	Heat shock protein, Hsp20 family; Belongs to the small heat shock protein (HSP20) family.	Endopeptidase Clp ATP-binding subunit B; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.	0.530
Lgra_2523	dnaK	Lgra_2523	Lgra_2296	Heat shock protein, Hsp20 family; Belongs to the small heat shock protein (HSP20) family.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.471
Lgra_2523	hspA_3	Lgra_2523	Lgra_0009	Heat shock protein, Hsp20 family; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein; Belongs to the small heat shock protein (HSP20) family.	0.788
clpA	Lgra_0010	Lgra_3281	Lgra_0010	ATP binding protease component ClpA; Belongs to the ClpA/ClpB family.	Heat shock hsp20; Belongs to the small heat shock protein (HSP20) family.	0.528
clpA	Lgra_2523	Lgra_3281	Lgra_2523	ATP binding protease component ClpA; Belongs to the ClpA/ClpB family.	Heat shock protein, Hsp20 family; Belongs to the small heat shock protein (HSP20) family.	0.530
clpA	dnaK	Lgra_3281	Lgra_2296	ATP binding protease component ClpA; Belongs to the ClpA/ClpB family.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.963
clpA	hspA_3	Lgra_3281	Lgra_0009	ATP binding protease component ClpA; Belongs to the ClpA/ClpB family.	Heat shock protein; Belongs to the small heat shock protein (HSP20) family.	0.530
clpB	Lgra_0010	Lgra_2424	Lgra_0010	Endopeptidase Clp ATP-binding subunit B; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.	Heat shock hsp20; Belongs to the small heat shock protein (HSP20) family.	0.528
clpB	Lgra_2523	Lgra_2424	Lgra_2523	Endopeptidase Clp ATP-binding subunit B; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.	Heat shock protein, Hsp20 family; Belongs to the small heat shock protein (HSP20) family.	0.530
clpB	dnaK	Lgra_2424	Lgra_2296	Endopeptidase Clp ATP-binding subunit B; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.968
clpB	hspA_3	Lgra_2424	Lgra_0009	Endopeptidase Clp ATP-binding subunit B; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.	Heat shock protein; Belongs to the small heat shock protein (HSP20) family.	0.530
dnaK	Lgra_0010	Lgra_2296	Lgra_0010	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Heat shock hsp20; Belongs to the small heat shock protein (HSP20) family.	0.460
dnaK	Lgra_2523	Lgra_2296	Lgra_2523	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Heat shock protein, Hsp20 family; Belongs to the small heat shock protein (HSP20) family.	0.471
dnaK	clpA	Lgra_2296	Lgra_3281	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	ATP binding protease component ClpA; Belongs to the ClpA/ClpB family.	0.963
dnaK	clpB	Lgra_2296	Lgra_2424	Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Endopeptidase Clp ATP-binding subunit B; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.	0.968