STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dinJAntitoxin DinJ. (86 aa)    
Predicted Functional Partners:
yafQ
mRNA interferase YafQ.
 
 
 0.995
higB_1
Toxin higB-2.
  
 
 0.624
relE_1
mRNA interferase RelE.
  
 
 0.624
relE_2
Toxin of the RelE-RelB toxin-antitoxin system.
  
 
 0.624
Lgra_1484
ATPase.
  
     0.576
hin_2-2
Site-specific DNA recombinase, e14 prophage (modular protein).
       0.508
Lgra_2587
ATPase.
  
     0.447
higA
Antitoxin HigA.
  
   
 0.439
Lgra_0022
Hypothetical protein.
 
     0.408
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.