STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traC_3Putative conjugative transfer protein TraC. (849 aa)    
Predicted Functional Partners:
Lgra_0041
Putative conjugative transfer protein TraU.
 
   
 0.964
Lgra_0042
Putative conjugative transfer protein TraW.
 
   
 0.963
Lgra_0037
Putative conjugative transfer protein TrbB.
 
     0.961
Lgra_0038
Putative conjugative transfer protein TraF.
 
     0.961
Lgra_0040
Putative conjugative transfer protein TrbC.
 
     0.961
Lgra_0036
Putative conjugative transfer protein TraH.
 
     0.960
Lgra_0035
Putative sex pilus assembly and mating pair protein TraG.
 
     0.958
trbI
Conjugal transfer protein trbI.
 
 0.954
Lgra_0046
Putative conjugative transfer protein TraB.
 
     0.951
Lgra_0039
Conjugal transfer mating pair stabilization protein TraN.
 
     0.946
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.