Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Lgra_0048Putative conjugative transfer protein TraE. (186 aa)    
Predicted Functional Partners:
Lgra_0047
Putative conjugative transfer protein TraK.
       0.842
traA
Putative fimbrial protein precursor (Pilin).
       0.842
Lgra_0049
Putative conjugative transfer protein TraL.
       0.795
Lgra_0045
Putative Type IV conjugative transfer system protein TraV.
       0.775
Lgra_0046
Putative conjugative transfer protein TraB.
       0.775
Lgra_0036
Putative conjugative transfer protein TraH.
     
 0.752
Lgra_0038
Putative conjugative transfer protein TraF.
     
 0.751
Lgra_0041
Putative conjugative transfer protein TraU.
       0.738
Lgra_0043
Putative TrbI protein.
       0.738
traC_3
Putative conjugative transfer protein TraC.
       0.738
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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