Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lgra_0069 | Lgra_0072 | Lgra_0069 | Lgra_0072 | Hypothetical protein. | Topology modulation protein. | 0.498 |
Lgra_0069 | fimB_1 | Lgra_0069 | Lgra_0070 | Hypothetical protein. | Type 1 fimbriae regulatory protein FimB. | 0.795 |
Lgra_0069 | recX-2 | Lgra_0069 | Lgra_0071 | Hypothetical protein. | Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family. | 0.568 |
Lgra_0072 | Lgra_0069 | Lgra_0072 | Lgra_0069 | Topology modulation protein. | Hypothetical protein. | 0.498 |
Lgra_0072 | fimB_1 | Lgra_0072 | Lgra_0070 | Topology modulation protein. | Type 1 fimbriae regulatory protein FimB. | 0.474 |
Lgra_0072 | recX-2 | Lgra_0072 | Lgra_0071 | Topology modulation protein. | Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family. | 0.591 |
dnaA | fimB_1 | Lgra_1282 | Lgra_0070 | Chromosome replication initiator DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Type 1 fimbriae regulatory protein FimB. | 0.423 |
dnaA | ftsK | Lgra_1282 | Lgra_2550 | Chromosome replication initiator DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | DNA translocase FtsK. | 0.514 |
dnaA | recR | Lgra_1282 | Lgra_0971 | Chromosome replication initiator DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Recombination and repair protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.661 |
fimB_1 | Lgra_0069 | Lgra_0070 | Lgra_0069 | Type 1 fimbriae regulatory protein FimB. | Hypothetical protein. | 0.795 |
fimB_1 | Lgra_0072 | Lgra_0070 | Lgra_0072 | Type 1 fimbriae regulatory protein FimB. | Topology modulation protein. | 0.474 |
fimB_1 | dnaA | Lgra_0070 | Lgra_1282 | Type 1 fimbriae regulatory protein FimB. | Chromosome replication initiator DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.423 |
fimB_1 | fimB_2 | Lgra_0070 | Lgra_3077 | Type 1 fimbriae regulatory protein FimB. | Type 1 fimbriae regulatory protein FimB. | 0.769 |
fimB_1 | ftsK | Lgra_0070 | Lgra_2550 | Type 1 fimbriae regulatory protein FimB. | DNA translocase FtsK. | 0.518 |
fimB_1 | recR | Lgra_0070 | Lgra_0971 | Type 1 fimbriae regulatory protein FimB. | Recombination and repair protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.494 |
fimB_1 | recX-2 | Lgra_0070 | Lgra_0071 | Type 1 fimbriae regulatory protein FimB. | Recombination regulator RecX; Modulates RecA activity; Belongs to the RecX family. | 0.568 |
fimB_1 | xerC_3 | Lgra_0070 | Lgra_0253 | Type 1 fimbriae regulatory protein FimB. | Hypothetical protein. | 0.743 |
fimB_2 | fimB_1 | Lgra_3077 | Lgra_0070 | Type 1 fimbriae regulatory protein FimB. | Type 1 fimbriae regulatory protein FimB. | 0.769 |
fimB_2 | xerC_3 | Lgra_3077 | Lgra_0253 | Type 1 fimbriae regulatory protein FimB. | Hypothetical protein. | 0.760 |
ftsK | dnaA | Lgra_2550 | Lgra_1282 | DNA translocase FtsK. | Chromosome replication initiator DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.514 |
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