STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcNDNA-binding transcriptional regulator. (187 aa)    
Predicted Functional Partners:
Lgra_0077
Hypothetical protein.
 
     0.676
Lgra_0078
YbaK / prolyl-tRNA synthetases associated domain protein.
 
     0.630
alaS_2
alanyl-tRNA synthetase.
 
     0.618
hipA_1-2
HipA protein.
  
   0.520
hipA_1
HipA protein, DNA binding regulator.
  
   0.520
hipA_2
HipA protein, DNA binding regulator.
  
   0.520
Lgra_2054
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.418
Lgra_0080
Hypothetical protein.
       0.407
Your Current Organism:
Legionella gratiana
NCBI taxonomy Id: 45066
Other names: ATCC 49413, CCUG 44894, CIP 105267, DSM 21233, L. gratiana, NCTC 12388, strain Lyon 8420412
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.